Supercomputing for Molecular Dynamics Simulations : Handling Multi-Trillion Particles in Nanofluidics / by Alexander Heinecke, Wolfgang Eckhardt, Martin Horsch, Hans-Joachim Bungartz.
Material type: TextLanguage: İngilizce Series: SpringerBriefs in Computer SciencePublisher: Cham : Springer International Publishing : Imprint: Springer, 2015Description: 1 online resourceContent type:- text
- computer
- online resource
- 9783319171487
- QA76.9.E94
Item type | Current library | Home library | Collection | Call number | Status | Notes | Date due | Barcode | |
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E-Book | Merkez Kütüphane | Merkez Kütüphane | E-Kitap Koleksiyonu | QA76.9.E94EBK (Browse shelf(Opens below)) | Geçerli değil-e-Kitap / Not applicable-e-Book | BİL | EBK00909 |
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Introduction -- Molecular Dynamics Simulation -- Parallelization of MD Algorithms and Load Balancing -- Efficient Implementation of the Force Calculation in MD Simulations -- Experiments -- Conclusion.
This work presents modern implementations of relevant molecular dynamics algorithms using ls1 mardyn, a simulation program for engineering applications. The text focuses strictly on HPC-related aspects, covering implementation on HPC architectures, taking Intel Xeon and Intel Xeon Phi clusters as representatives of current platforms. The work describes distributed and shared-memory parallelization on these platforms, including load balancing, with a particular focus on the efficient implementation of the compute kernels. The text also discusses the software-architecture of the resulting code.
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